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The first line for the file must contain a single number indicating how many pattern sizes need to be searched. The other lines are made up of three columns containing the pattern size, number of repeats and number of mis- matches allowed for each pattern size The default values are: output-filename = %s min-patt-len = %i max-patt-len = %i percent match = %lf min-repeats = %i Filtering = OFF ================================================ :o:m:n:t:l:qfp:%i%i%lf%i%sError: missing argument to option -%c Error: unknown option -%c Something funny happened Error: invalid argument provided to option %c :o:m:n:t:l:qfp:No input file provided ***************************************************************** EXhaustive Tandem Repeats Alternative Search (ExTRAS) Copyright (c) Arun Krishnan & Francis Tang, BII, 2003 Options Summary ----------------- Sequence File = %s Search Method = Direct Minimum Pattern Size to Search = %i Maximum Pattern Size to Search = %i Minimum number of repeats to report = %d Percent Match = %e Filtering = ON Filtering = OFF Tracking Search Progress!! Reading Sequence Data...Error: cannot open input file %s r%i%i %i %iN=%i Cannot allocate enough memory Done Sequence Description: %s Sequence length: %i base pairs -wStarting Tandem Repeats Search... %i:%i:%i:%i:%i %i:%i:%i:%i:%i %i:%i:%i:%i:%i %i:%i:%i:%i:%i Search Completed! Check results in "%s" file ***************************************************************** %i:%i:%i:%i:%i %i:%i:%i:%i:%i rCannot allocate memory Something wrong with the file Something wrong with the file Xx H  P     @   8 9H999:<>>??K^8!>-?<9G  QX?@u?H?0K?P9K?P9  $ x( 80 8G  ^O?9kr>~9 8?;`!?"<;  <:  p:  !:;<B9O `@W?f 9Xl^0t;z;P 8T9 P$<@ 4 6<P8P0!T <`T < ^ P 5@ P4:< ,:2 O 7lZP(`^(g9} K 7h;  ?8 ;;^8;@P  PPbin/extrs_filter-solariscrti.s_ex_shared0_cpp_finidata0_ex_range0_ex_text0crt1.s__get_exit_frame_monitor_ptr__do_exit_code_ptr__crt_scratchvalues-Xa.cBbss.bssDdata.dataDrodata.rodataextrs_filter.c___const_seg_900000101___const_seg_900000201___const_seg_900000301___const_seg_900000401___const_seg_900000501___const_seg_900000605read_input.ccrtn.s_ex_shared1_ex_range1_ex_text1_START__END__environgetopt_get_exit_frame_monitorfopenbetacf__1cG__CrunVdo_exit_code_in_range6Fpv1_v_fgetcatexitmainfprintf_start_PROCEDURE_LINKAGE_TABLE_fclose_lib_versionbinocdf__environ_lock_finipos_colfgets__fsr_init_valuecallocstr_init_etextcalc_binproballoc_errorstrcmpbetaiSTOREREP_DYNAMICdescscore__iobfreeoptind__xargccheck_cyclicstart_oldlstat_ex_register64_exit__1cH__CimplKcplus_fini6F_v_read_inputn_coloptarg_GLOBAL_OFFSET_TABLE___1cH__CimplKcplus_init6F_v__edatareverse_chkexp__1cG__CrunMdo_exit_code6F_v____Argvgammlnlogsscanf_endstrncpyoptopt_ex_deregister64__xargvmatch_col<?e%\4*<?e%Z4cg: Sun WorkShop 6 update 2 Compiler Common 6.2 2001/05/15@(#)stdio.h 1.79 01/04/16 SMI@(#)stdio_iso.h 1.2 99/10/25 SMI@(#)feature_tests.h 1.18 99/07/26 SMI@(#)isa_defs.h 1.20 99/05/04 SMI@(#)va_list.h 1.13 01/02/08 SMI@(#)stdio_tag.h 1.3 98/04/20 SMI@(#)stdio_impl.h 1.13 01/11/16 SMI@(#)string.h 1.24 99/08/10 SMI@(#)string_iso.h 1.2 99/11/09 SMI@(#)stdlib.h 1.48 00/04/13 SMI@(#)stdlib_iso.h 1.3 01/03/09 SMI@(#)math.h 2.11 00/09/07 SMI@(#)math_iso.h 1.2 00/09/07 SMI@(#)floatingpoint.h 2.5 99/06/22 SMI@(#)ieeefp.h 2.8 99/10/29@(#)unistd.h 1.60 01/07/29 SMI@(#)types.h 1.73 02/10/10 SMI@(#)machtypes.h 1.13 99/05/04 SMI@(#)int_types.h 1.6 97/08/20 SMI@(#)select.h 1.17 01/08/15 SMI@(#)time.h 2.70 02/01/28 SMI@(#)time.h 1.39 99/08/10 SMI@(#)time_iso.h 1.1 99/08/09 SMI@(#)time_impl.h 1.7 01/09/06 SMI@(#)unistd.h 1.39 01/07/29 SMIacomp: Sun WorkShop 6 update 2 C 5.3 2001/05/15cg: Sun WorkShop 6 update 2 Compiler Common 6.2 2001/05/15@(#)alloca.h 1.15 99/03/11 SMI@(#)types.h 1.73 02/10/10 SMI@(#)isa_defs.h 1.20 99/05/04 SMI@(#)feature_tests.h 1.18 99/07/26 SMI@(#)machtypes.h 1.13 99/05/04 SMI@(#)int_types.h 1.6 97/08/20 SMI@(#)select.h 1.17 01/08/15 SMI@(#)time.h 2.70 02/01/28 SMI@(#)time.h 1.39 99/08/10 SMI@(#)time_iso.h 1.1 99/08/09 SMI@(#)time_impl.h 1.7 01/09/06 SMI@(#)stdio.h 1.79 01/04/16 SMI@(#)stdio_iso.h 1.2 99/10/25 SMI@(#)va_list.h 1.13 01/02/08 SMI@(#)stdio_tag.h 1.3 98/04/20 SMI@(#)stdio_impl.h 1.13 01/11/16 SMI@(#)stdlib.h 1.48 00/04/13 SMI@(#)stdlib_iso.h 1.3 01/03/09 SMI@(#)stat.h 1.3 01/07/29 SMI@(#)stat_impl.h 1.2 01/07/29 SMI@(#)unistd.h 1.60 01/07/29 SMI@(#)unistd.h 1.39 01/07/29 SMIacomp: Sun WorkShop 6 update 2 C 5.3 2001/05/15ld: Software Generation Utilities - Solaris Link Editors: 5.9-1.374.interp.hash.dynsym.dynstr.SUNW_version.rela.ex_shared.rela.cpp_finidata.rela.data.rela.bss.rela.plt.text.init.fini.exception_ranges.rodata.got.dynamic.data1.symtab.strtab.stab.index.comment.shstrtab.stab.indexstrextrs_filter.cV=6.0 ; DBG_GEN=3.4.2 ; Xa ; O ; R=Sun WorkShop 6 update 2 C 5.3 2001/05/15/cluster/home/arun/Work/extras-arun; /cluster/apps/SUNWspro/bin/../WS6U2/bin/cc -fast -xarch=v9 -lm -c src/extrs_filter.cmainread_input.cV=6.0 ; DBG_GEN=3.4.2 ; Xa ; O ; R=Sun WorkShop 6 update 2 C 5.3 2001/05/15/cluster/home/arun/Work/extras-arun; /cluster/apps/SUNWspro/bin/../WS6U2/bin/cc -fast -xarch=v9 -lm -c src/read_input.cXX xx< " H Ho P-B P P`=B PB [B `eB@@o  ( u88T{9H9H999999j:: <<2>>PB>>U??p?? g`KKHK x@ X` \T \ cd