ELFP4V4 (444?1?1@1@@ 1 /lib/ld-linux.so.2GNU   ("P8-XH%",X33h@@x/Q2Ȇ>؆I-w(9 8p libm.so.6logexp__gmon_start__libc.so.6stdoutfgetsoptarg__lxstatcallocfprintf__deregister_frame_infooptindstrncpysscanfgettimeofdaygetoptfgetcfclosestderroptoptexitfopen_IO_stdin_used__libc_start_main__register_frame_infofreeGLIBC_2.0GLIBC_2.1 ii "ii ii      Uy5%%h%h%h%h%h %h(%h0%h8p%h@`%hHP%hP@%hX0%h` %hh%hp%hx%h%h%h1^PTRhСhQVh<USP[;XtЋ]ÉULuIHtt&BHH uHt h\L]ÍvU]ÍU(thh]Ð&U]ÍUWVS\UM UЉMEUMEE]]E]]EM؉UȉMuE⻠KH9ɉ]u]EEuW?$_PEUM$EEMXEu ۉ]uEEu ۉ]uEUMEEEMEu ى]uEEu ى]uEEt Gd؃d~ h }Tme[^_]ÉUVSEE]EE]Ut&1۾?݅Eu؃ h(1۾?EE@t"݅E@uEEݝ@ZEEݕ@Ƀ$۽@Dݝp݅@ܭpݝp1ۭʉ`@˃~ى݅ $jEʃܥp$ݝ`۽ݝx8Eܭ`ݝ`1ۭʉ`@˃~ u$ܥ`ݝhE$۽ݝXEܭXݝX1ۭʍv`@˃~ u$IܥXu1۾?ݝPu(݅ݝHe$݅xܥhEܥP܍HM$ݝx'݅E݅@EـEu*$uuuu۽(ۭ(u[؉݅e$uuuu۽(Hۭ(ɉ݅uݕ e[^]ÍvUWVSp(hh?uh } DžDž̺?Dž$Dž DžDžDž h`$$$ $`$$$K}^X7h o$`c$fW$K$?$@3$'$$ $`$$$$`$$$@$$$$@$sY[h hbXZ$hϭP^_ h> h%Y[h!$<$$vCƃ:P$Rh5h 2AP$Ph5Q Ph5RPhj5PPh5DžDžQPhn5dDžR5h5y$ PPh5Dž AQ5hq5-$ h$vu RSh5$PhXWVÃI19}҉ u h$4 h@$$$$ѮZY5 h$_X$h [^ h`wZYhe hLu h% h5' hF$d 5 hHhh` u!5 h$1h}P Ph'SD PhS_Xj [^j ZYj v1; Dž}cvPh'R$VWhQ& ; | ^ D_Ph j@u jDDt h 8$\u3 hXZh`h^_h@9 |  -u!u hh u hzu DžjPs$; Dž ⋅)@u19~Rh݅ڍXٽVfV% fTjjݝH݅HٽDDƅE ٭DD۝٭Du8LH)DQ+1@9} @vB9|+DžHDž@ WxDžH9 H1ҋ=@4Dž1~ t-9}v8uACJu@;C18A‰LD8CuF)@vF)Ћ@B;QuAHJ;H}$;ufRPQ j5HPRxDž'jR4 1QRh ;ux5HQ j5HPRxDž]Cj5H' R;ux5HQ j5HPRxDž}fvj5HG0P5Hh Dž+@9T; jPuh)΅W~Rv)P<$4$$ٝ(^م($h¯wu2V|xh ;[5@u- hԯXZh h$@e[^1_]ÍvUS EE1ۀ@UMEs9ʐUMES$$[CP$XÈ@rɋ]ÐUHE$}}]mm]1`mʉ@˃~ $zeÉUEE ]vUVSQEM)΅] U~Rv)P<$4$$]^EZ[^]UWVU} SLz11F9}8uCBI;]|[^_]ÉUWVSEEEEEE]u ;3}M E$tFtAHu3Rss ss3hQuuWuVS {3+C9~CS 9EPsRss3hQ8uuWuVS` {PC19EE19EE;CE#U t%EEEE}Eu ]e[^_] e[^_]UVSu]EUMHPX p[^]UWVSĀEPuVjh}V]\ƃjCPUtq V>u-E H1]EGC V t;}|U1 tGC Vu VV h h +e[^_]ÉUStttv'ЋuX[]U]ÍUSR[ê v]a or b too big, or MAXIT too small in betacf======================================================== EXhaustive Tandem Repeats Alternative Search (ExTRAS) (c) Arun Krishnan & Francis Tang, BII, 2003 This program finds repeat sequences of length from "n" upto MIN(N,LEN/2) where "n" and "N" are the user defined min and maximum pattern size and "LEN" is the length of the input sequence %s [options] where input-file contains the input sequence -o output-filename file in which to store results, - for stdout -m min-patt-len minimum pattern length -n max-patt-len maximum pattern length -t thresh percent matches between sequences -l min-repeats minimum number of repeats for output -q quiet -c print_count Prints total patterns searched every print_count steps -f filter out redundancies from the set of -p params_filename file containing the threshold values and number of repeats for each pattern size. The first line for the file must contain a single number indicating how many pattern sizes need to be searched. The other lines are made up of three columns containing the pattern size, number of repeats and number of mis- matches allowed for each pattern size ================================================ Error: missing argument to option -%c Error: invalid argument provided to option %c ***************************************************************** EXhaustive Tandem Repeats Alternative Search (ExTRAS) Copyright (c) Arun Krishnan & Francis Tang, BII, 2003 Minimum Pattern Size to Search = %i Maximum Pattern Size to Search = %i Minimum number of repeats to report = %d Error: cannot open input file %s Cannot allocate enough memory Sequence length: %i base pairs Starting Tandem Repeats Search... Total Pattern Sizes Done = %i KH9v !>@? ?' @@.A?Bad x in routine betairesults.out The usage is as follows: and where [options] are exhaustive repeats The default values are: output-filename = %s min-patt-len = %i max-patt-len = %i percent match = %lf min-repeats = %i Filtering = OFF :o:m:n:t:l:qfp:c:%lf%sError: unknown option -%c Something funny happened No input file provided Options Summary ----------------- Sequence File = %s Search Method = Direct Percent Match = %e Filtering = ON Filtering = OFF Tracking Search Progress!! Reading Sequence Data...r%i %i %iN=%i Done Sequence Description: %s -w%i:%i:%i:%i:%i SEARCH TIME = %f Search Completed! Check results in "%s" file ̑h< А|T$Cannot allocate memory Something wrong with the file  v S@V6+WUL;8@͍4sS?־"  С(  X(0o؄oo.>N^n~Άކ.>dtdt9<Hr0,V1V cV$[Lby !"#3%K&a1x234568 9";B=X>n?@ABCDE F$G;HTIiNQRST9UUVmX[^ehl q r5 uP vm y z } & @ ˔t F  #V Y 4u < C F S Z ^ltMyn4 Lb8wbKL#5LwH8KgLUZ^?awb\r5 7!899S:m dtinit.c/usr/src/build/87998-i386/BUILD/glibc-2.2.5/csu/gcc2_compiled.int:t(0,1)=r(0,1);-2147483648;2147483647;char:t(0,2)=r(0,2);0;127;long int:t(0,3)=r(0,3);-2147483648;2147483647;unsigned int:t(0,4)=r(0,4);0000000000000;0037777777777;long unsigned int:t(0,5)=r(0,5);0000000000000;0037777777777;long long int:t(0,6)=@s64;r(0,6);01000000000000000000000;0777777777777777777777;long long unsigned int:t(0,7)=@s64;r(0,7);0000000000000;01777777777777777777777;short int:t(0,8)=@s16;r(0,8);-32768;32767;short unsigned int:t(0,9)=@s16;r(0,9);0;65535;signed char:t(0,10)=@s8;r(0,10);-128;127;unsigned char:t(0,11)=@s8;r(0,11);0;255;float:t(0,12)=r(0,1);4;0;double:t(0,13)=r(0,1);8;0;long double:t(0,14)=r(0,1);12;0;complex int:t(0,15)=s8real:(0,1),0,32;imag:(0,1),32,32;;complex float:t(0,16)=r(0,16);8;0;complex double:t(0,17)=r(0,17);16;0;complex long double:t(0,18)=r(0,18);24;0;__builtin_va_list:t(0,19)=*(0,20)=(0,20)../include/libc-symbols.h/usr/src/build/87998-i386/BUILD/glibc-2.2.5/build-i386-linux/config.h../sysdeps/gnu/_G_config.h../sysdeps/unix/sysv/linux/bits/types.h../include/features.h../include/sys/cdefs.h../misc/sys/cdefs.h/usr/lib/gcc-lib/i386-redhat-linux/2.96/include/stddef.hsize_t:t(8,1)=(0,4)__u_char:t(4,1)=(0,11)__u_short:t(4,2)=(0,9)__u_int:t(4,3)=(0,4)__u_long:t(4,4)=(0,5)__u_quad_t:t(4,5)=(0,7)__quad_t:t(4,6)=(0,6)__int8_t:t(4,7)=(0,10)__uint8_t:t(4,8)=(0,11)__int16_t:t(4,9)=(0,8)__uint16_t:t(4,10)=(0,9)__int32_t:t(4,11)=(0,1)__uint32_t:t(4,12)=(0,4)__int64_t:t(4,13)=(0,6)__uint64_t:t(4,14)=(0,7)__qaddr_t:t(4,15)=(4,16)=*(4,6)__dev_t:t(4,17)=(4,5)__uid_t:t(4,18)=(4,3)__gid_t:t(4,19)=(4,3)__ino_t:t(4,20)=(4,4)__mode_t:t(4,21)=(4,3)__nlink_t:t(4,22)=(4,3)__off_t:t(4,23)=(0,3)__loff_t:t(4,24)=(4,6)__pid_t:t(4,25)=(0,1)__ssize_t:t(4,26)=(0,1)__rlim_t:t(4,27)=(4,4)__rlim64_t:t(4,28)=(4,5)__id_t:t(4,29)=(4,3)__fsid_t:t(4,30)=(4,31)=s8__val:(4,32)=ar(4,33)=r(4,33);0000000000000;0037777777777;;0;1;(0,1),0,64;;__daddr_t:t(4,34)=(0,1)__caddr_t:t(4,35)=(4,36)=*(0,2)__time_t:t(4,37)=(0,3)__useconds_t:t(4,38)=(0,4)__suseconds_t:t(4,39)=(0,3)__swblk_t:t(4,40)=(0,3)__clock_t:t(4,41)=(0,3)__clockid_t:t(4,42)=(0,1)__timer_t:t(4,43)=(0,1)__key_t:t(4,44)=(0,1)__ipc_pid_t:t(4,45)=(0,9)__blksize_t:t(4,46)=(0,3)__blkcnt_t:t(4,47)=(0,3)__blkcnt64_t:t(4,48)=(4,6)__fsblkcnt_t:t(4,49)=(4,4)__fsblkcnt64_t:t(4,50)=(4,5)__fsfilcnt_t:t(4,51)=(4,4)__fsfilcnt64_t:t(4,52)=(4,5)__ino64_t:t(4,53)=(4,5)__off64_t:t(4,54)=(4,24)__t_scalar_t:t(4,55)=(0,3)__t_uscalar_t:t(4,56)=(0,5)__intptr_t:t(4,57)=(0,1)__socklen_t:t(4,58)=(0,4)../linuxthreads/sysdeps/pthread/bits/pthreadtypes.h../sysdeps/unix/sysv/linux/bits/sched.h__sched_param:T(10,1)=s4__sched_priority:(0,1),0,32;;_pthread_fastlock:T(9,1)=s8__status:(0,3),0,32;__spinlock:(0,1),32,32;;_pthread_descr:t(9,2)=(9,3)=*(9,4)=xs_pthread_descr_struct:__pthread_attr_s:T(9,5)=s36__detachstate:(0,1),0,32;__schedpolicy:(0,1),32,32;__schedparam:(10,1),64,32;__inheritsched:(0,1),96,32;__scope:(0,1),128,32;__guardsize:(8,1),160,32;__stackaddr_set:(0,1),192,32;__stackaddr:(0,19),224,32;__stacksize:(8,1),256,32;;pthread_attr_t:t(9,6)=(9,5)pthread_cond_t:t(9,7)=(9,8)=s12__c_lock:(9,1),0,64;__c_waiting:(9,2),64,32;;pthread_condattr_t:t(9,9)=(9,10)=s4__dummy:(0,1),0,32;;pthread_key_t:t(9,11)=(0,4)pthread_mutex_t:t(9,12)=(9,13)=s24__m_reserved:(0,1),0,32;__m_count:(0,1),32,32;__m_owner:(9,2),64,32;__m_kind:(0,1),96,32;__m_lock:(9,1),128,64;;pthread_mutexattr_t:t(9,14)=(9,15)=s4__mutexkind:(0,1),0,32;;pthread_once_t:t(9,16)=(0,1)_pthread_rwlock_t:T(9,17)=s32__rw_lock:(9,1),0,64;__rw_readers:(0,1),64,32;__rw_writer:(9,2),96,32;__rw_read_waiting:(9,2),128,32;__rw_write_waiting:(9,2),160,32;__rw_kind:(0,1),192,32;__rw_pshared:(0,1),224,32;;pthread_rwlock_t:t(9,18)=(9,17)pthread_rwlockattr_t:t(9,19)=(9,20)=s8__lockkind:(0,1),0,32;__pshared:(0,1),32,32;;pthread_spinlock_t:t(9,21)=(0,1)pthread_barrier_t:t(9,22)=(9,23)=s20__ba_lock:(9,1),0,64;__ba_required:(0,1),64,32;__ba_present:(0,1),96,32;__ba_waiting:(9,2),128,32;;pthread_barrierattr_t:t(9,24)=(9,25)=s4__pshared:(0,1),0,32;;pthread_t:t(9,26)=(0,5)wchar_t:t(11,1)=(0,3)wint_t:t(11,2)=(0,4)../include/wchar.h../wcsmbs/wchar.h../sysdeps/unix/sysv/linux/i386/bits/wchar.h__mbstate_t:t(13,1)=(13,2)=s8__count:(0,1),0,32;__value:(13,3)=u4__wch:(11,2),0,32;__wchb:(13,4)=ar(4,33);0;3;(0,2),0,32;;,32,32;;_G_fpos_t:t(3,1)=(3,2)=s12__pos:(4,23),0,32;__state:(13,1),32,64;;_G_fpos64_t:t(3,3)=(3,4)=s16__pos:(4,54),0,64;__state:(13,1),64,64;;../include/gconv.h../iconv/gconv.h :T(17,1)=e__GCONV_OK:0,__GCONV_NOCONV:1,__GCONV_NODB:2,__GCONV_NOMEM:3,__GCONV_EMPTY_INPUT:4,__GCONV_FULL_OUTPUT:5,__GCONV_ILLEGAL_INPUT:6,__GCONV_INCOMPLETE_INPUT:7,__GCONV_ILLEGAL_DESCRIPTOR:8,__GCONV_INTERNAL_ERROR:9,; :T(17,2)=e__GCONV_IS_LAST:1,__GCONV_IGNORE_ERRORS:2,;__gconv_fct:t(17,3)=(17,4)=*(17,5)=f(0,1)__gconv_init_fct:t(17,6)=(17,7)=*(17,8)=f(0,1)__gconv_end_fct:t(17,9)=(17,10)=*(17,11)=f(0,20)__gconv_trans_fct:t(17,12)=(17,13)=*(17,14)=f(0,1)__gconv_trans_context_fct:t(17,15)=(17,16)=*(17,17)=f(0,1)__gconv_trans_query_fct:t(17,18)=(17,19)=*(17,20)=f(0,1)__gconv_trans_init_fct:t(17,21)=(17,22)=*(17,23)=f(0,1)__gconv_trans_end_fct:t(17,24)=(17,25)=*(17,26)=f(0,20)__gconv_trans_data:T(17,27)=s20__trans_fct:(17,12),0,32;__trans_context_fct:(17,15),32,32;__trans_end_fct:(17,24),64,32;__data:(0,19),96,32;__next:(17,28)=*(17,27),128,32;;__gconv_step:T(17,29)=s56__shlib_handle:(17,30)=*(17,31)=xs__gconv_loaded_object:,0,32;__modname:(17,32)=*(0,2),32,32;__counter:(0,1),64,32;__from_name:(4,36),96,32;__to_name:(4,36),128,32;__fct:(17,3),160,32;__init_fct:(17,6),192,32;__end_fct:(17,9),224,32;__min_needed_from:(0,1),256,32;__max_needed_from:(0,1),288,32;__min_needed_to:(0,1),320,32;__max_needed_to:(0,1),352,32;__stateful:(0,1),384,32;__data:(0,19),416,32;;__gconv_step_data:T(17,33)=s36__outbuf:(17,34)=*(0,11),0,32;__outbufend:(17,34),32,32;__flags:(0,1),64,32;__invocation_counter:(0,1),96,32;__internal_use:(0,1),128,32;__statep:(17,35)=*(13,1),160,32;__state:(13,1),192,64;__trans:(17,28),256,32;;__gconv_info:T(17,36)=s8__nsteps:(8,1),0,32;__steps:(17,37)=*(17,29),32,32;__data:(17,38)=ar(4,33);0;-1;(17,33),64,0;;__gconv_t:t(17,39)=(17,40)=*(17,36)_G_iconv_t:t(3,5)=(3,6)=u44__cd:(17,36),0,64;__combined:(3,7)=s44__cd:(17,36),0,64;__data:(17,33),64,288;;,0,352;;_G_int16_t:t(3,8)=(0,8)_G_int32_t:t(3,9)=(0,1)_G_uint16_t:t(3,10)=(0,9)_G_uint32_t:t(3,11)=(0,4)_IO_stdin_used:G(0,1)GCC: (GNU) 2.96 20000731 (Red Hat Linux 7.3 2.96-110)GCC: (GNU) 2.96 20000731 (Red Hat Linux 7.3 2.96-110)GCC: (GNU) 2.96 20000731 (Red Hat Linux 7.3 2.96-110)GCC: (GNU) 2.96 20000731 (Red Hat Linux 7.3 2.96-110)GCC: (GNU) 2.96 20000731 (Red Hat Linux 7.3 2.96-110)GCC: (GNU) 2.96 20000731 (Red Hat Linux 7.3 2.96-110)GCC: (GNU) 2.96 20000731 (Red Hat Linux 7.3 2.96-110)01.0101.0101.0101.0101.0101.0101.01.symtab.strtab.shstrtab.interp.note.ABI-tag.hash.dynsym.dynstr.gnu.version.gnu.version_r.rel.dyn.rel.plt.init.text.fini.rodata.data.eh_frame.dynamic.ctors.dtors.got.bss.stab.stabstr.comment.note# 1((7 ?Go6To؄Pc ((0l XX up@{PPС!"? @@1` 11tt2||22\2l 2 :TUV|[? bX(؄(X   P С @t|t "t 2 =HA|OL[ q  @ Pt2  x С P `0 0 A N@Te@ rНk D("8- < \  H%"HP $6Ht$ Q(2 ]P dX3vh@Lx/PT< `d @  2С "4Ȇ>L؆\n-LH(@8/AȞ I init.cinitfini.cgcc2_compiled.call_gmon_startcrtstuff.cp.0__DTOR_LIST__completed.1__do_global_dtors_aux__EH_FRAME_BEGIN__fini_dummyobject.2frame_dummyinit_dummyforce_to_data__CTOR_LIST____do_global_ctors_aux__CTOR_END____DTOR_END____FRAME_END__extrs_filter.ccof.0output_filename.1input_filename.2read_input.cn_colfgetc@@GLIBC_2.0elapsed_timecalc_binproballoc_error_DYNAMIC__register_frame_info@@GLIBC_2.0_fp_hwfprintf@@GLIBC_2.0read_inputgammlncheck_cyclic_init__deregister_frame_info@@GLIBC_2.0scorebetacfstdout@@GLIBC_2.0stderr@@GLIBC_2.0STOREREPreverse_chk_startgetopt@@GLIBC_2.0fgets@@GLIBC_2.0match_col__lxstat@@GLIBC_2.0pos_colstart_old__bss_startmain__libc_start_main@@GLIBC_2.0descexp@@GLIBC_2.0betaidata_startprintf@@GLIBC_2.0_finifclose@@GLIBC_2.1gettimeofday@@GLIBC_2.0exit@@GLIBC_2.0calloc@@GLIBC_2.0sscanf@@GLIBC_2.0_edata_GLOBAL_OFFSET_TABLE_free@@GLIBC_2.0_endstrstrncpy@@GLIBC_2.0fopen@@GLIBC_2.1optarg@@GLIBC_2.0_IO_stdin_usednroll__data_startlog@@GLIBC_2.0optind@@GLIBC_2.0optopt@@GLIBC_2.0binocdf__gmon_start__