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DMSS
Quantitative, scalable discreet-event simulation of metabolic pathways.
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Dynafit
Simulation and statistical analysis of complex kinetics and multiple
simultaneous equilibria arising in chemistry, biochemistry, biology.
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E-Cell
E-Cell 3: A Multi-Algorithm, Multi-Timescale Simulation Software Environment.
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Gepasi
A software package for modeling biochemical systems.
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Jarnac
Jarnac: An Interactive Metabolic Systems Language.
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ModelMaker
A Modeling Environment.
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Virtual Cell
A remote user modeling and simulation environment where users can create
biological models of various types and run simulations.
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